The eyes to the unseeable - #R2bP

It had travelled all the way from Japan, containing the smaller of two new scanning electron microscopes (SEMs), sent by JEOL Ltd (Japan Electron Optical Laboratories) – a top manufacturer of this type of technology in the world. The larger SEM will arrive in May this year.

From left, Usuke Uetake, application specialist at JEOL, Professor Jaco Olivier and Dr Arno Jansen van Vuuren

“We have worked with JEOL since the start of CHRTEM 15 years ago,” says Professor Jaco Olivier, Director of the CHRTEM, a national infrastructure platform supported by the Department of Science, Technology and Innovation (DSTI) and the National Research Foundation (NRF), providing national and international support to industry, academia and research centres.

“We are an imaging facility that studies materials at a microscopic scale down to the atomic level. We are the eyes to the unseeable – the tiniest components in a variety of material types, including catalysts, nanomedicines and minerals, and structural materials such as titanium, aluminium, steel and nickel alloys. We analyse and research the microscopic structures of materials and how they relate to material properties and performance.

The CHRTEM on South Campus houses the only double abberation corrected transmission electron microscope on the African content. 

In December 2025, Olivier and the CHRTEM’s Facility Manager, Dr Arno Jansen van Vuuren accompanied JEOL’s agent in South Africa, Angstrom Scientific, on a visit to Japan to JEOL’s manufacturing site where they had demonstrations on the two SEMs and other instruments they are looking to replace over the next couple of years.

“Monitoring the state of materials with electron microscopes equipped with unique detector technology is essential to see if they are maintaining their material properties under a range of conditions,” Olivier explains.

Professor Jaco Olivier and Dr Arno Jansen van Vuuren visiting JOEL in Japan.  

Modern scientific and industrial applications use a wide range of materials, engineered at the microscopic scale to yield specific properties suitable for their application in harsh operational environments.

Any changes in the microstructure, and by extension the properties, can lead to a catastrophic failure of the materials, impacting safety, commercial output, business performance and the huge associated infrastructure costs, such as in power plants.

The wooden crate being offloaded at the CHRTEM, and the smaller of two new scanning electron microscopes (SEMs), sent by JEOL Ltd (Japan Electron Optical Laboratories) all the way from Japan 

SEMs are extensively used at the CHRTEM to investigate structural materials, particularly steels and aluminium alloys. In the case of aluminium, the facility works closely with local industry partners such as Hulamin, providing critical insights into the condition of materials at various stages of production.

By enabling detailed evaluation of microstructural features, SEM analysis helps ensure that end products meet required specifications while also supporting the optimisation of manufacturing processes.

“Another partnership within the University and nationally is on green hydrogen. We use imaging to assist research groups in designing new materials and catalysts. One example relates to hydrogen safety as it will have to be stored in vessels under immense pressure and cryogenic temperatures. We look at the interaction of hydrogen in steels (proposed as the vessel material) at these pressures and temperatures to evaluate the integrity and possible degradation mechanisms of the steel, as it could be catastrophic if a vessel fails.”

The facility is in constant use by a range of disciplines, including physics, engineering, zoology, biochemistry, physiology, medicine and more. One of our strategic partnerships is with the DSTI nanomedicine platform in the Medical School at Mandela University, to investigate and produce a range of experimental nanomedicines, for the treatment of diseases like cancer and tuberculosis, and diabetic wounds.

In addition, the Centre’s SEM capabilities support a diverse range of marine research initiatives in collaboration with the Mandela University Institute for Coastal and Marine Research. These include projects focused on the identification and description of new oceanic invertebrate species, as well as studies on marine diatom ecology and taxonomy, the development of diatom-based indices for assessing environmental health and disturbance, and bioprospecting for valuable diatom-derived products.

A notable recent outcome is the development of an otolith atlas of marine fishes, produced through a collaboration between the Port Elizabeth Museum at Bayworld in Gqeberha and the Department of Zoology and Institute for Coastal and Marine Research at Nelson Mandela University. An otolith is a hard, calcium carbonate structure found in the inner ear of vertebrates, primarily known for its role in fish balance, orientation, and hearing. In fish, they grow daily, acting like tree rings to determine age.

The atlas incorporates high-resolution images generated using SEMs at the CHRTEM to achieve detailed micrographs of fish otoliths, significantly enhancing the quality and scope of the atlas following the publication of its first edition.

Over the past 15 years, the CHRTEM has logged more than 30 000 instrument hours for research and supported almost 1000 postgraduate students with their research or training, produced close to 300 peer-reviewed articles and engaged in over 600 conference proceedings - including national and international presentations and lectures.

“We are now in a phase of renewal as the instruments in the lab are getting beyond their factory support period and need replacing. These new SEMs are the first step in this process,” says Olivier. Nelson Mandela University funded most of the cost of these with support from the DSTI and NRF, who have mostly funded the other instruments in the CHRTEM.”

To inspect the SEMs, Olivier and co travelled to Tokyo and then to a city on its western outskirts called Tachikawa where JEOL is situated. “The company is very impressive and incredibly well run, and the people, as is the case throughout Japan are incredibly helpful and friendly in a polite way,” says Olivier. “We were wonderfully hosted, and we experienced outstanding Japanese cuisine in traditional restaurants overlooking Japanese gardens.”  

Olivier adds that few places in the world can live up to the standard of Japanese engineering.  “We have had great success working with JEOL all these years. They do not bring anything to market unless it is the best, and we witnessed the professionalism and skill with which they design and operate the instruments.”

Once the two new SEMs are set up at the CHRTEM, a Japanese engineer from JEOL will come out to do the final setup. Together with Angstrom Scientific in South Africa, they offer comprehensive service support, including remote diagnostics where applicable.

Down the line, the CHRTEM is also looking to replace its aberration-corrected Transmission Electron Microscope (TEM) – this is a R100million+ investment. “Our current model is still incredibly good but the new generation is much more stable, the speed of acquisition and amount of signal acquired is substantially better, and the images are sharper,” Olivier explains.

“The CHRTEM is the only facility in Africa that has an aberration-corrected TEM, whereas Europe and China have hundreds of them, and they replace them every seven or eight years because it is such a rapidly developing technology. It is incredibly important that South Africa continue to invest in this technology as it is a critical national capability needed to remain globally competitive.”